IL_4U4O_213

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUCAGGAUC*GAGAAUUUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|C|1675
4U4O|1|2|U|1676
4U4O|1|2|C|1677
4U4O|1|2|A|1678
4U4O|1|2|G|1679
4U4O|1|2|G|1680
4U4O|1|2|A|1681
4U4O|1|2|U|1682
4U4O|1|2|C|1683
*
4U4O|1|2|G|1718
4U4O|1|2|A|1719
4U4O|1|2|G|1720
4U4O|1|2|A|1721
4U4O|1|2|A|1722
4U4O|1|2|U|1723
4U4O|1|2|U|1724
4U4O|1|2|U|1725
4U4O|1|2|G|1726

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A