IL_4U4O_393

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUUGA*UCUUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_393 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.345

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4U4O|1|6|C|708
4U4O|1|6|C|709
4U4O|1|6|U|710
4U4O|1|6|U|711
4U4O|1|6|G|712
4U4O|1|6|A|713
*
4U4O|1|6|U|725
4U4O|1|6|C|726
4U4O|1|6|U|727
4U4O|1|6|U|728
4U4O|1|6|G|729
4U4O|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains