IL_4U4O_457

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4U4O|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_457 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.278

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

4U4O|1|1|G|1262
4U4O|1|1|A|1263
4U4O|1|1|G|1264
4U4O|1|1|U|1265
4U4O|1|1|G|1266
*
4U4O|1|1|C|1275
4U4O|1|1|U|1276
4U4O|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains