3D structure

PDB id
4U4O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Geneticin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U4O_464 not in the Motif Atlas
Geometric match to IL_7KGA_003
Geometric discrepancy: 0.2688
The information below is about IL_7KGA_003
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

4U4O|1|1|C|1951
4U4O|1|1|G|1952
4U4O|1|1|G|1953
*
4U4O|1|1|C|2094
4U4O|1|1|G|2095

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M9
60S ribosomal protein L19-A

Coloring options:


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