IL_4U4O_475

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAUCAA*UUUCAACGG

Length

16 nucleotides

Bulged bases

4U4O|1|2|U|313, 4U4O|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|C|310
4U4O|1|2|U|311
4U4O|1|2|A|312
4U4O|1|2|U|313
4U4O|1|2|C|314
4U4O|1|2|A|315
4U4O|1|2|A|316
*
4U4O|1|2|U|348
4U4O|1|2|U|349
4U4O|1|2|U|350
4U4O|1|2|C|351
4U4O|1|2|A|352
4U4O|1|2|A|353
4U4O|1|2|C|354
4U4O|1|2|G|355
4U4O|1|2|G|356

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain D3

40S ribosomal protein S23-A

Chain S8

40S ribosomal protein S8-A