IL_4U4O_497

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCUGG*CCGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|5|C|1670
4U4O|1|5|C|1671
4U4O|1|5|U|1672
4U4O|1|5|G|1673
4U4O|1|5|G|1674
*
4U4O|1|5|C|1773
4U4O|1|5|C|1774
4U4O|1|5|G|1775
4U4O|1|5|G|1776
4U4O|1|5|U|1777
4U4O|1|5|G|1778

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n2

60S ribosomal protein L22-A

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38