IL_4U4O_502

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4O_502 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.3369

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

4U4O|1|5|G|2206
4U4O|1|5|A|2207
4U4O|1|5|A|2208
4U4O|1|5|U|2209
4U4O|1|5|G|2210
*
4U4O|1|5|C|2235
4U4O|1|5|G|2236
4U4O|1|5|C|2237

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA