IL_4U4O_510

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUGGC*GAUUUCCAA

Length

14 nucleotides

Bulged bases

4U4O|1|6|G|651, 4U4O|1|6|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|6|U|649
4U4O|1|6|U|650
4U4O|1|6|G|651
4U4O|1|6|G|652
4U4O|1|6|C|653
*
4U4O|1|6|G|677
4U4O|1|6|A|678
4U4O|1|6|U|679
4U4O|1|6|U|680
4U4O|1|6|U|681
4U4O|1|6|C|682
4U4O|1|6|C|683
4U4O|1|6|A|684
4U4O|1|6|A|685

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A