IL_4U4O_519

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCUUAG*CAGAGCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|6|U|1684
4U4O|1|6|G|1685
4U4O|1|6|C|1686
4U4O|1|6|U|1687
4U4O|1|6|U|1688
4U4O|1|6|A|1689
4U4O|1|6|G|1690
*
4U4O|1|6|C|1711
4U4O|1|6|A|1712
4U4O|1|6|G|1713
4U4O|1|6|A|1714
4U4O|1|6|G|1715
4U4O|1|6|C|1716
4U4O|1|6|G|1717

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s8

40S ribosomal protein S8-A