IL_4U4O_531
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 4U4O|1|2|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4O_531 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3721
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4U4O|1|2|G|751
4U4O|1|2|A|752
4U4O|1|2|A|753
4U4O|1|2|A|754
4U4O|1|2|A|755
4U4O|1|2|A|756
4U4O|1|2|A|757
4U4O|1|2|U|758
4U4O|1|2|U|759
*
4U4O|1|2|A|791
4U4O|1|2|U|792
4U4O|1|2|A|793
4U4O|1|2|U|794
4U4O|1|2|U|795
4U4O|1|2|A|796
4U4O|1|2|G|797
4U4O|1|2|C|798
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain D2
- 40S ribosomal protein S22-A
- Chain S4
- 40S ribosomal protein S4-A
- Chain S9
- 40S ribosomal protein S9-A
Coloring options: