3D structure

PDB id
4U4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Homoharringtonine bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGACAUGGCUGGG*CAUAAU
Length
19 nucleotides
Bulged bases
4U4Q|1|5|U|620
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U4Q|1|5|A|436
4U4Q|1|5|G|437
4U4Q|1|5|A|438
4U4Q|1|5|C|439
4U4Q|1|5|A|440
4U4Q|1|5|U|441
4U4Q|1|5|G|442
4U4Q|1|5|G|443
4U4Q|1|5|C|491
4U4Q|1|5|U|492
4U4Q|1|5|G|493
4U4Q|1|5|G|494
4U4Q|1|5|G|495
*
4U4Q|1|5|C|618
4U4Q|1|5|A|619
4U4Q|1|5|U|620
4U4Q|1|5|A|621
4U4Q|1|5|A|622
4U4Q|1|5|U|623

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l6
60S ribosomal protein L6-A
Chain o2
60S ribosomal protein L32
Chain o3
60S ribosomal protein L33-A

Coloring options:

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