IL_4U4Q_350

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Q_350 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.2732

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4U4Q|1|5|C|3161
4U4Q|1|5|C|3162
4U4Q|1|5|A|3163
4U4Q|1|5|C|3164
4U4Q|1|5|A|3165
4U4Q|1|5|C|3166
*
4U4Q|1|5|G|3284
4U4Q|1|5|C|3285
4U4Q|1|5|G|3286
4U4Q|1|5|U|3287
4U4Q|1|5|G|3288
4U4Q|1|5|G|3289

Current chains

Chain 5

25S ribosomal RNA

Nearby chains