IL_4U4Q_475

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGUUUGG*CCAUCGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Q|1|2|A|817
4U4Q|1|2|C|818
4U4Q|1|2|G|819
4U4Q|1|2|U|820
4U4Q|1|2|U|821
4U4Q|1|2|U|822
4U4Q|1|2|G|823
4U4Q|1|2|G|824
*
4U4Q|1|2|C|848
4U4Q|1|2|C|849
4U4Q|1|2|A|850
4U4Q|1|2|U|851
4U4Q|1|2|C|852
4U4Q|1|2|G|853
4U4Q|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A