IL_4U4Q_488

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAAAGU*AACCAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Q|1|5|G|2210
4U4Q|1|5|U|2211
4U4Q|1|5|C|2212
4U4Q|1|5|A|2213
4U4Q|1|5|A|2214
4U4Q|1|5|A|2215
4U4Q|1|5|G|2216
4U4Q|1|5|U|2217
*
4U4Q|1|5|A|2228
4U4Q|1|5|A|2229
4U4Q|1|5|C|2230
4U4Q|1|5|C|2231
4U4Q|1|5|A|2232
4U4Q|1|5|A|2233
4U4Q|1|5|G|2234
4U4Q|1|5|C|2235

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o6

60S ribosomal protein L36-A

Chain q2

60S ribosomal protein L42-A