IL_4U4Q_495

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Q_495 not in the Motif Atlas

Geometric match to IL_9E6Q_011

Geometric discrepancy: 0.389

The information below is about IL_9E6Q_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

4U4Q|1|1|U|177
4U4Q|1|1|U|178
*
4U4Q|1|1|A|238
4U4Q|1|1|G|239
4U4Q|1|1|U|240
4U4Q|1|1|G|241

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain O5

60S ribosomal protein L35-A

Chain O7

60S ribosomal protein L37-A