IL_4U4R_225
3D structure
- PDB id
- 4U4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lactimidomycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4R_225 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.0762
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U4R|1|3|G|21
4U4R|1|3|A|22
4U4R|1|3|A|23
4U4R|1|3|A|24
4U4R|1|3|G|25
4U4R|1|3|C|26
4U4R|1|3|A|27
*
4U4R|1|3|U|53
4U4R|1|3|U|54
4U4R|1|3|A|55
4U4R|1|3|A|56
4U4R|1|3|G|57
4U4R|1|3|C|58
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain L5
- 60S ribosomal protein L5
- Chain M1
- 60S ribosomal protein L11-B
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