IL_4U4U_025

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

4U4U|1|1|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_025 not in the Motif Atlas

Homologous match to IL_5TBW_025

Geometric discrepancy: 0.053

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4U4U|1|1|A|755
4U4U|1|1|U|756
*
4U4U|1|1|A|775
4U4U|1|1|U|776
4U4U|1|1|U|777

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain M8

60S ribosomal protein L18-A

Chain N9

60S ribosomal protein L29