IL_4U4U_056

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4U4U|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_056 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.1273

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4U4U|1|1|G|1262
4U4U|1|1|A|1263
4U4U|1|1|G|1264
4U4U|1|1|U|1265
4U4U|1|1|G|1266
*
4U4U|1|1|C|1275
4U4U|1|1|U|1276
4U4U|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains