IL_4U4U_147

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_147 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.1182

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4U4U|1|2|U|150
4U4U|1|2|G|151
4U4U|1|2|U|152
*
4U4U|1|2|A|162
4U4U|1|2|G|163
4U4U|1|2|A|164

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A