IL_4U4U_267

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

4U4U|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4U_267 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.4668

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4U4U|1|5|C|977
4U4U|1|5|G|978
4U4U|1|5|U|979
4U4U|1|5|A|980
4U4U|1|5|U|981
4U4U|1|5|C|982
*
4U4U|1|5|G|1101
4U4U|1|5|A|1102
4U4U|1|5|A|1103
4U4U|1|5|G|1104

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l7

60S ribosomal protein L7-A

Chain m8

60S ribosomal protein L18-A

Chain n9

60S ribosomal protein L29