IL_4U4U_463

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGGUAAA*UUUAAAUAU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4U|1|1|G|991
4U4U|1|1|A|992
4U4U|1|1|G|993
4U4U|1|1|G|994
4U4U|1|1|U|995
4U4U|1|1|A|996
4U4U|1|1|A|997
4U4U|1|1|A|998
*
4U4U|1|1|U|1050
4U4U|1|1|U|1051
4U4U|1|1|U|1052
4U4U|1|1|A|1053
4U4U|1|1|A|1054
4U4U|1|1|A|1055
4U4U|1|1|U|1056
4U4U|1|1|A|1057
4U4U|1|1|U|1058

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain L5

60S ribosomal protein L5

Chain L7

60S ribosomal protein L7-A

Chain M0

60S ribosomal protein L10

Chain N1

60S ribosomal protein L21-A