IL_4U4U_482

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCC*GGAGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4U|1|5|U|177
4U4U|1|5|U|178
4U4U|1|5|C|179
4U4U|1|5|C|180
*
4U4U|1|5|G|236
4U4U|1|5|G|237
4U4U|1|5|A|238
4U4U|1|5|G|239
4U4U|1|5|U|240
4U4U|1|5|G|241

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A

Chain o7

60S ribosomal protein L37-A