IL_4U4U_488

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAAAGU*AACCAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4U|1|5|G|2210
4U4U|1|5|U|2211
4U4U|1|5|C|2212
4U4U|1|5|A|2213
4U4U|1|5|A|2214
4U4U|1|5|A|2215
4U4U|1|5|G|2216
4U4U|1|5|U|2217
*
4U4U|1|5|A|2228
4U4U|1|5|A|2229
4U4U|1|5|C|2230
4U4U|1|5|C|2231
4U4U|1|5|A|2232
4U4U|1|5|A|2233
4U4U|1|5|G|2234
4U4U|1|5|C|2235

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o6

60S ribosomal protein L36-A

Chain q2

60S ribosomal protein L42-A