IL_4U4Y_017
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4Y_017 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.5392
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
4U4Y|1|1|C|435
4U4Y|1|1|A|436
4U4Y|1|1|G|437
4U4Y|1|1|A|438
4U4Y|1|1|C|439
4U4Y|1|1|A|440
4U4Y|1|1|G|494
4U4Y|1|1|G|495
*
4U4Y|1|1|C|618
4U4Y|1|1|A|619
4U4Y|1|1|U|620
4U4Y|1|1|A|621
4U4Y|1|1|A|622
4U4Y|1|1|U|623
4U4Y|1|1|G|624
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L6
- 60S ribosomal protein L6-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain O2
- 60S ribosomal protein L32
- Chain O3
- 60S ribosomal protein L33-A
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