IL_4U4Y_099

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_099 not in the Motif Atlas

Homologous match to IL_5TBW_101

Geometric discrepancy: 0.0775

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4U4Y|1|1|G|2770
4U4Y|1|1|U|2771
4U4Y|1|1|C|2772
4U4Y|1|1|C|2773
*
4U4Y|1|1|G|2787
4U4Y|1|1|C|2788

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain M8

60S ribosomal protein L18-A

Chain N8

60S ribosomal protein L28

Chain Q2

60S ribosomal protein L42-A