IL_4U4Y_146

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCGAC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_146 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2981

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4U4Y|1|2|U|185
4U4Y|1|2|C|186
4U4Y|1|2|G|187
4U4Y|1|2|A|188
4U4Y|1|2|C|189
*
4U4Y|1|2|G|196
4U4Y|1|2|A|197
4U4Y|1|2|A|198
4U4Y|1|2|G|199
4U4Y|1|2|A|200

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S8

40S ribosomal protein S8-A