IL_4U4Y_276

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

4U4Y|1|5|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_276 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.1502

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4U4Y|1|5|U|1074
4U4Y|1|5|A|1075
4U4Y|1|5|C|1076
*
4U4Y|1|5|G|1083
4U4Y|1|5|A|1084

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain n9

60S ribosomal protein L29