IL_4U4Y_441
3D structure
- PDB id
- 4U4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Pactamycin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4U4Y|1|6|A|1516, 4U4Y|1|6|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U4Y_441 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.0983
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4U4Y|1|6|G|1488
4U4Y|1|6|U|1489
4U4Y|1|6|C|1490
4U4Y|1|6|U|1491
4U4Y|1|6|A|1492
4U4Y|1|6|A|1493
4U4Y|1|6|C|1494
*
4U4Y|1|6|G|1513
4U4Y|1|6|U|1514
4U4Y|1|6|A|1515
4U4Y|1|6|A|1516
4U4Y|1|6|U|1517
4U4Y|1|6|C|1518
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s3
- 40S ribosomal protein S3
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