IL_4U4Y_470

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACGGUGGCC*GGAAUCCGCUAAGGAGUGUGUAACAACUCAC

Length

41 nucleotides

Bulged bases

4U4Y|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|1|G|1230
4U4Y|1|1|A|1231
4U4Y|1|1|C|1232
4U4Y|1|1|G|1233
4U4Y|1|1|G|1234
4U4Y|1|1|U|1235
4U4Y|1|1|G|1236
4U4Y|1|1|G|1237
4U4Y|1|1|C|1238
4U4Y|1|1|C|1239
*
4U4Y|1|1|G|1249
4U4Y|1|1|G|1250
4U4Y|1|1|A|1251
4U4Y|1|1|A|1252
4U4Y|1|1|U|1253
4U4Y|1|1|C|1254
4U4Y|1|1|C|1255
4U4Y|1|1|G|1256
4U4Y|1|1|C|1257
4U4Y|1|1|U|1258
4U4Y|1|1|A|1259
4U4Y|1|1|A|1260
4U4Y|1|1|G|1261
4U4Y|1|1|G|1262
4U4Y|1|1|A|1263
4U4Y|1|1|G|1264
4U4Y|1|1|U|1265
4U4Y|1|1|G|1266
4U4Y|1|1|U|1267
4U4Y|1|1|G|1268
4U4Y|1|1|U|1269
4U4Y|1|1|A|1270
4U4Y|1|1|A|1271
4U4Y|1|1|C|1272
4U4Y|1|1|A|1273
4U4Y|1|1|A|1274
4U4Y|1|1|C|1275
4U4Y|1|1|U|1276
4U4Y|1|1|C|1277
4U4Y|1|1|A|1278
4U4Y|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains