IL_4U4Y_517

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

4U4Y|1|6|A|1346, 4U4Y|1|6|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U4Y_517 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.1317

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

4U4Y|1|6|A|1345
4U4Y|1|6|A|1346
4U4Y|1|6|U|1347
4U4Y|1|6|A|1348
*
4U4Y|1|6|U|1377
4U4Y|1|6|U|1378
4U4Y|1|6|C|1379
4U4Y|1|6|U|1380

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

40S ribosomal protein S20