IL_4U4Z_246

3D structure

PDB id

4U4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGACAUGGCUGGG*CAUAAU

Length

19 nucleotides

Bulged bases

4U4Z|1|5|G|443, 4U4Z|1|5|U|620

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Z|1|5|A|436
4U4Z|1|5|G|437
4U4Z|1|5|A|438
4U4Z|1|5|C|439
4U4Z|1|5|A|440
4U4Z|1|5|U|441
4U4Z|1|5|G|442
4U4Z|1|5|G|443
4U4Z|1|5|C|491
4U4Z|1|5|U|492
4U4Z|1|5|G|493
4U4Z|1|5|G|494
4U4Z|1|5|G|495
*
4U4Z|1|5|C|618
4U4Z|1|5|A|619
4U4Z|1|5|U|620
4U4Z|1|5|A|621
4U4Z|1|5|A|622
4U4Z|1|5|U|623

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l6

60S ribosomal protein L6-A

Chain o2

60S ribosomal protein L32

Chain o3

60S ribosomal protein L33-A