3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_004 not in the Motif Atlas
Homologous match to IL_5TBW_004
Geometric discrepancy: 0.0614
The information below is about IL_5TBW_004
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_05035.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
38

Unit IDs

4U50|1|1|C|27
4U50|1|1|C|28
*
4U50|1|1|G|56
4U50|1|1|A|57
4U50|1|1|G|58

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain M3
60S ribosomal protein L13-A
Chain M5
60S ribosomal protein L15-A
Chain O5
60S ribosomal protein L35-A
Chain O7
60S ribosomal protein L37-A

Coloring options:


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