3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUU*AUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_016 not in the Motif Atlas
Homologous match to IL_5TBW_016
Geometric discrepancy: 0.0818
The information below is about IL_5TBW_016
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4U50|1|1|U|429
4U50|1|1|U|430
4U50|1|1|U|431
*
4U50|1|1|A|628
4U50|1|1|U|629
4U50|1|1|A|630

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain M6
60S ribosomal protein L16-A
Chain O2
60S ribosomal protein L32
Chain O3
60S ribosomal protein L33-A

Coloring options:


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