3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
4U50|1|1|A|780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_024 not in the Motif Atlas
Homologous match to IL_5TBW_024
Geometric discrepancy: 0.0868
The information below is about IL_5TBW_024
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

4U50|1|1|C|752
4U50|1|1|C|753
*
4U50|1|1|G|779
4U50|1|1|A|780
4U50|1|1|G|781

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M8
60S ribosomal protein L18-A
Chain N8
60S ribosomal protein L28
Chain N9
60S ribosomal protein L29

Coloring options:


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