3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_257 not in the Motif Atlas
Homologous match to IL_5TBW_027
Geometric discrepancy: 0.0717
The information below is about IL_5TBW_027
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4U50|1|5|C|803
4U50|1|5|C|804
4U50|1|5|G|805
*
4U50|1|5|C|938
4U50|1|5|U|939
4U50|1|5|G|940

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l4
60S ribosomal protein L4-A
Chain n8
60S ribosomal protein L28

Coloring options:


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