IL_4U50_336

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

4U50|1|5|A|2941, 4U50|1|5|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U50_336 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.0792

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4U50|1|5|C|2881
4U50|1|5|U|2882
*
4U50|1|5|A|2940
4U50|1|5|A|2941
4U50|1|5|C|2942
4U50|1|5|G|2943

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain n3

60S ribosomal protein L23-A