3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AAAUAG*CUUCUU
Length
12 nucleotides
Bulged bases
4U50|1|6|A|1346, 4U50|1|6|U|1347
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U50|1|6|A|1344
4U50|1|6|A|1345
4U50|1|6|A|1346
4U50|1|6|U|1347
4U50|1|6|A|1348
4U50|1|6|G|1349
*
4U50|1|6|C|1376
4U50|1|6|U|1377
4U50|1|6|U|1378
4U50|1|6|C|1379
4U50|1|6|U|1380
4U50|1|6|U|1381

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c6
40S ribosomal protein S16-A
Chain d0
40S ribosomal protein S20

Coloring options:

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