3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U50_466 not in the Motif Atlas
Homologous match to IL_8P9A_305
Geometric discrepancy: 0.0614
The information below is about IL_8P9A_305
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

4U50|1|1|G|1898
4U50|1|1|G|1899
4U50|1|1|A|1900
4U50|1|1|A|1901
4U50|1|1|G|1902
4U50|1|1|U|1903
4U50|1|1|C|1904
4U50|1|1|G|1905
4U50|1|1|G|1906
*
4U50|1|1|C|2333
4U50|1|1|U|2334
4U50|1|1|G|2335
4U50|1|1|U|2336
4U50|1|1|C|2337

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain N3
60S ribosomal protein L23-A

Coloring options:


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