IL_4U50_478

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

4U50|1|2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U50_478 not in the Motif Atlas

Geometric match to IL_8VTW_033

Geometric discrepancy: 0.2431

The information below is about IL_8VTW_033

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U50|1|2|G|1050
4U50|1|2|G|1051
4U50|1|2|U|1052
4U50|1|2|G|1053
*
4U50|1|2|C|1066
4U50|1|2|C|1067
4U50|1|2|C|1068

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain D7

40S ribosomal protein S27-A

Chain S0

40S ribosomal protein S0-A

Chain S1

40S ribosomal protein S1-A