IL_4U52_005
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 4U52|1|1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4U52_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0353
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4U52|1|1|C|31
4U52|1|1|U|32
4U52|1|1|G|33
4U52|1|1|A|34
4U52|1|1|A|35
4U52|1|1|C|36
4U52|1|1|U|37
4U52|1|1|U|38
*
4U52|1|1|A|45
4U52|1|1|U|46
4U52|1|1|C|47
4U52|1|1|A|48
4U52|1|1|A|49
4U52|1|1|U|50
4U52|1|1|A|51
4U52|1|1|A|52
4U52|1|1|G|53
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain N8
- 60S ribosomal protein L28
- Chain O7
- 60S ribosomal protein L37-A
- Chain Q2
- 60S ribosomal protein L42-A
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