IL_4U52_095

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4U52|1|1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_095 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.0399

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

4U52|1|1|U|2423
4U52|1|1|A|2424
4U52|1|1|G|2425
*
4U52|1|1|U|2604
4U52|1|1|G|2605
4U52|1|1|G|2606
4U52|1|1|G|2607

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L2

60S ribosomal protein L2-A

Chain M5

60S ribosomal protein L15-A

Chain Q2

60S ribosomal protein L42-A