IL_4U52_150

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

4U52|1|2|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|2|A|213
4U52|1|2|G|214
4U52|1|2|A|215
4U52|1|2|U|216
4U52|1|2|A|217
4U52|1|2|A|218
4U52|1|2|A|219
4U52|1|2|A|220
4U52|1|2|A|221
4U52|1|2|A|222
4U52|1|2|U|223
4U52|1|2|C|224
4U52|1|2|A|225
4U52|1|2|A|226
4U52|1|2|U|227
4U52|1|2|G|228
4U52|1|2|U|229
4U52|1|2|C|230
4U52|1|2|U|231
4U52|1|2|U|232
4U52|1|2|C|233
4U52|1|2|G|234
4U52|1|2|G|235
4U52|1|2|A|236
4U52|1|2|C|237
4U52|1|2|U|238
4U52|1|2|C|239
4U52|1|2|U|240
4U52|1|2|U|241
4U52|1|2|U|242
4U52|1|2|G|243
*
4U52|1|2|C|250
4U52|1|2|A|251
4U52|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A