IL_4U52_204

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUAG*CUUCU

Length

10 nucleotides

Bulged bases

4U52|1|2|A|1346, 4U52|1|2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_204 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.208

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|2|A|1345
4U52|1|2|A|1346
4U52|1|2|U|1347
4U52|1|2|A|1348
4U52|1|2|G|1349
*
4U52|1|2|C|1376
4U52|1|2|U|1377
4U52|1|2|U|1378
4U52|1|2|C|1379
4U52|1|2|U|1380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C9

40S ribosomal protein S19-A

Chain D0

40S ribosomal protein S20