IL_4U52_287

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4U52|1|5|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_287 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1846

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4U52|1|5|G|1262
4U52|1|5|A|1263
4U52|1|5|G|1264
4U52|1|5|U|1265
4U52|1|5|G|1266
*
4U52|1|5|C|1275
4U52|1|5|U|1276
4U52|1|5|C|1277

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

Unknown Protein m2