IL_4U52_330

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

4U52|1|5|A|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_330 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.2807

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4U52|1|5|G|2714
4U52|1|5|A|2715
4U52|1|5|U|2716
*
4U52|1|5|A|2740
4U52|1|5|C|2741

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain n9

60S ribosomal protein L29

Chain q2

60S ribosomal protein L42-A