IL_4U52_401

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGC*GAUUUCCA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_401 not in the Motif Atlas

Geometric match to IL_4V88_518

Geometric discrepancy: 0.1916

The information below is about IL_4V88_518

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06083.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4U52|1|6|U|650
4U52|1|6|G|651
4U52|1|6|G|652
4U52|1|6|C|653
*
4U52|1|6|G|677
4U52|1|6|A|678
4U52|1|6|U|679
4U52|1|6|U|680
4U52|1|6|U|681
4U52|1|6|C|682
4U52|1|6|C|683
4U52|1|6|A|684

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s9

40S ribosomal protein S9-A