IL_4U52_447

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U52_447 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.069

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U52|1|6|U|1665
4U52|1|6|U|1666
4U52|1|6|A|1667
*
4U52|1|6|U|1734
4U52|1|6|U|1735
4U52|1|6|G|1736

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n3

60S ribosomal protein L23-A

Chain s8

40S ribosomal protein S8-A