IL_4U53_120

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_120 not in the Motif Atlas

Homologous match to IL_5TBW_122

Geometric discrepancy: 0.1173

The information below is about IL_5TBW_122

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4U53|1|1|A|3168
4U53|1|1|U|3169
4U53|1|1|A|3170
*
4U53|1|1|U|3280
4U53|1|1|U|3281
4U53|1|1|U|3282

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M7

60S ribosomal protein L17-A

Chain O3

60S ribosomal protein L33-A