IL_4U53_167

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCGGUC*GGAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U53|1|2|G|652
4U53|1|2|C|653
4U53|1|2|C|654
4U53|1|2|G|655
4U53|1|2|G|656
4U53|1|2|U|657
4U53|1|2|C|658
*
4U53|1|2|G|676
4U53|1|2|G|677
4U53|1|2|A|678
4U53|1|2|U|679
4U53|1|2|U|680
4U53|1|2|U|681
4U53|1|2|C|682

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S9

40S ribosomal protein S9-A