IL_4U53_207

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U53_207 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.0759

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4U53|1|2|G|1540
4U53|1|2|G|1541
4U53|1|2|G|1542
4U53|1|2|A|1543
4U53|1|2|U|1544
4U53|1|2|A|1545
*
4U53|1|2|U|1566
4U53|1|2|U|1567
4U53|1|2|C|1568
4U53|1|2|A|1569
4U53|1|2|A|1570
4U53|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A